Welcome!

@BigDataExpo Authors: Elizabeth White, Liz McMillan, Scott Allen, Ed Featherston, Pat Romanski

Related Topics: @BigDataExpo, Java IoT, Open Source Cloud, Containers Expo Blog, Server Monitoring, @CloudExpo

@BigDataExpo: Blog Feed Post

Big Data – Storage Mediums and Data Structures

Big Data presents something of a storage dilemma. There is no one data store to rule them all.

My working title was Big Data, Storage Dilemma.

They say dilemma. I say dilemna. I'm serious. I spell it dilemna.

Big Data presents something of a storage dilemma. There is no one data store to rule them all.

Should different data structures be persisted to different storage mediums?

Storage Medium
Identifying the appropriate medium is a function of performance, cost, and capacity.

Random Access Memory
It's fast. Very. It's expense. Very.

If we are configuring an HP DL980 G7 server, it will cost $3,672 for 128GB of memory with 8x 16GB modules or $9,996 for 128GB of memory with 4x 32GB modules. That is $28-78 / GB.

We can configure an HP DL980 G7 server with up to 4TB of memory.

Solid State Drive
It's not as fast or as expensive as random access memory. It's faster than a hard disk drive. A lot faster. It's more expensive than a hard disk drive. A lot more expensive.

If we are configuring an HP DL980 G7 server, it will cost $4,199 for a 400GB SAS MLC drive or $7,419 for a 400GB SAS SLC drive. That is $10-18 / GB. It's a performance / size trade-off. While SLC drives often perform better, MLC drives are often available in larger sizes. Further, the read / write performance is either symmetric or asymmetric.

That, and SLC drives often have greater endurance.


Sequential
Read
(MB/s)
Sequential
Write
(MB/s)
Random
Read
(IOPS)
Random
Write
(IOPS)
Intel 520 (480GB) 550 520 50,000 50,000
Intel 520 (240GB) 550 520 50,000 80,000
Intel DC S3700 500 460 75,000 36,000

The performance of solid state drives can vary:

  • consumer / enterprise
  • MLC / eMLC / SLC
  • SATA / SAS / PCIe

The capacity of enterprise solid state drives is often less than that of enterprise hard disk drives (4TB). However, the capacity of PCIe drives such as the Fusion-io ioDrive Octal (5.12TB / 10.24TB) is greater than that of enterprise hard disk drives (4TB). In addition, the performance of PCIe drives is greater than that of SAS or SATA drives.


Sequential
Read
(MB/s)
Sequential
Write
(MB/s)
Random
Read
(IOPS)
Random
Write
(IOPS)
Intel 910 (800GB) 2,000 1,000 180,000 75,000

Hard Disk Drive

It may not be fast, but it is inexpensive.

If we are configuring an HP DL980 G7 server, it will cost $309 for a 300GB 10K drive or $649 for a 300GB 15K drive. That is $1-2 / GB. It's a performance / size trade-off. While a 15K drive will perform better than a 10K drive, it will often have less capacity. The sequential read / write performance of hard disk drives is often between 150-200MB/s. As such, a RAID configuration may be a cost effective alternative to a single solid state drive for sequential read / write access.

The capacity of enterprise hard disk drives (4TB) is often greater than that of enterprise solid state drives.

Data Structure
Hash Table

JBoss Data Grid is an in-memory data grid with the data stored in a hash table. However, JBoss Data Grid supports persistence via write-behind or write-through. For all intents and purposes (e.g. map / reduce), all of the data should fit in memory.

Access

  • Random Reads, Random Writes

Riak is a key / value store. If persistence has been configured with Bitcast, the data is stored in a log structured hash table. An in-memory hash table contains the key / value pointers. The value is a pointer to the data. As such, all of the key / value pointers must fit in memory. The data is persisted via append only log files.

Access

  • Complex Index in Memory
  • Random Reads, Sequential Writes

Point queries perform well in hash tables. Range queries do not. Though there is always map / reduce.

B-Tree
MongoDB is a document database with the data stored in a B-Tree. The data is persisted via memory mapped files.

Access

  • Partial Index (Internal Nodes) in Memory
  • Random Reads, Sequential Reads, Random Writes

CouchDB is a document database with the data stored in a B+Tree. The data is persisted via append only log files.

Access

  • Partial Index in Memory
  • Random Reads, Sequential Reads, Sequential Writes

In a B+ Tree, the data is only stored in the leaf nodes. In a B-Tree, the data is stored in both the internal nodes and the leaf nodes. The advantage of a B+ Tree is that the leaf nodes are linked. As a result, range queries perform better with a B+ Tree. However, point queries perform better with a B-Tree.

CouchDB has implemented an append only B+ Tree. An alternative is the copy-on-write (CoW) B+ Tree. A write optimization for a B-Tree is buffering. First, the data written to an internal buffer in an internal node. Second, the buffer is flushed to a leaf node. As a result, random writes are turned in to sequential writes. The cost of random writes is thus amortized.  However, I am not aware of any open source data stores that have implemented a CoW B+ Tree or have implemented buffering with a B-Tree.

Range queries perform well with a B/B+ Tree. Point queries, not as well as hash tables.

Log Structured Merge Tree
Apache HBase and Apache Cassandra are both column oriented data stores, and they have both store data in an LSM-Tree. Apache HBase has implemented a cache oblivious lookahead array (COLA). Apache Cassandra has implemented a sorted array merge tree (SAMT).

In both implementations, a write is first written to a write-ahead log. Next, it is written to a memtable. A memtable is an in-memory sorted string table (SSTable). Later, the memtable is flushed and persisted as an SSTable. As result, random writes are turned in to sequential writes. However, a point query with an LSM-Tree may require multiple random reads.

Apache HBase implemented a single-level index with HFile version 1. However, because every index was cached, it resulted in high memory usage.

Apache HBase implemented a multi-level index a la a B+ Tree with HFile (SSTable) version 2. The SSTable contains a root index, a root index with leaf indexes, or a root index with an intermediate index and leaf indexes. The root index is stored in memory. The intermediate and leaf indexes may be stored in the block cache. In addition, the SSTable contains a compound (block level) bloom filter. The bloom filter is used to determine if the data is not in the data block.

Recommendation / Access

  • Partial Index / Bloom Filter in Memory
  • Random Reads, Sequential Reads, Sequential Writes

A read optimization for an LSM-Tree is fractional cascading. The idea is that each level contains both data and pointers to data in the next level. However, I am not aware of any open source data stores that have implemented fractional cascading.

I like the idea of a hybrid / tiered storage solution for an LSM-Tree implementation with the first level in memory, second level on solid state drives, and third level on hard disk drives. I've seen this solution described in academia, but I am not aware of any open source implementations.

Conclusion
I find it interesting that key / value stores often store data in a hash table, that document stores often store data in a B+/B-Tree, and that column oriented stores often store data in an LSM-Tree. Perhaps it is because key / value stores focus on the performance of point queries, document stores support secondary indexes (MongoDB) / views  (CouchDB), and column oriented stores support range queries. Perhaps it because document stores were not created with distribution (shards / partitions) in mind and thus assume that the complete index can not be stored in memory.

Notes
I found this paper to be very helpful in examining data structures as it covers most of the ones highlighted in this post:

Efficient, Scalable, and Versatile Application and System Transaction Management for Direct Storage Layers (link)

Read the original blog entry...

More Stories By Daniel Thompson

I curate the content on this page, but the credit goes to my talented colleagues for the posts that you see here. Much of what you read on this page is the work of friends at How to JBoss, and I encourage you to drop by the site at http://www.howtojboss.com for some of the best JBoss technical and non-technical content for developers, architects and technology executives on the Web.

@BigDataExpo Stories
The IoTs will challenge the status quo of how IT and development organizations operate. Or will it? Certainly the fog layer of IoT requires special insights about data ontology, security and transactional integrity. But the developmental challenges are the same: People, Process and Platform. In his session at @ThingsExpo, Craig Sproule, CEO of Metavine, will demonstrate how to move beyond today's coding paradigm and share the must-have mindsets for removing complexity from the development proc...
SYS-CON Events announced today that EastBanc Technologies will exhibit at SYS-CON's 18th International Cloud Expo®, which will take place on June 7-9, 2016, at the Javits Center in New York City, NY. EastBanc Technologies has been working at the frontier of technology since 1999. Today, the firm provides full-lifecycle software development delivering flexible technology solutions that seamlessly integrate with existing systems – whether on premise or cloud. EastBanc Technologies partners with p...
SYS-CON Events announced today that ContentMX, the marketing technology and services company with a singular mission to increase engagement and drive more conversations for enterprise, channel and SMB technology marketers, has been named “Sponsor & Exhibitor Lounge Sponsor” of SYS-CON's 18th Cloud Expo, which will take place on June 7-9, 2016, at the Javits Center in New York City, New York. “CloudExpo is a great opportunity to start a conversation with new prospects, but what happens after the...
SYS-CON Events announced today that AppNeta, the leader in performance insight for business-critical web applications, will exhibit and present at SYS-CON's @DevOpsSummit at Cloud Expo New York, which will take place on June 7-9, 2016, at the Javits Center in New York City, NY. AppNeta is the only application performance monitoring (APM) company to provide solutions for all applications – applications you develop internally, business-critical SaaS applications you use and the networks that deli...
The cloud era has reached the stage where it is no longer a question of whether a company should migrate, but when. Enterprises have embraced the outsourcing of where their various applications are stored and who manages them, saving significant investment along the way. Plus, the cloud has become a defining competitive edge. Companies that fail to successfully adapt risk failure. The media, of course, continues to extol the virtues of the cloud, including how easy it is to get there. Migrating...
As organizations shift towards IT-as-a-service models, the need for managing and protecting data residing across physical, virtual, and now cloud environments grows with it. Commvault can ensure protection, access and E-Discovery of your data – whether in a private cloud, a Service Provider delivered public cloud, or a hybrid cloud environment – across the heterogeneous enterprise. In his general session at 18th Cloud Expo, Randy De Meno, Chief Technologist - Windows Products and Microsoft Part...
The IoT is changing the way enterprises conduct business. In his session at @ThingsExpo, Eric Hoffman, Vice President at EastBanc Technologies, discuss how businesses can gain an edge over competitors by empowering consumers to take control through IoT. We'll cite examples such as a Washington, D.C.-based sports club that leveraged IoT and the cloud to develop a comprehensive booking system. He'll also highlight how IoT can revitalize and restore outdated business models, making them profitable...
SYS-CON Events announced today that MangoApps will exhibit at SYS-CON's 18th International Cloud Expo®, which will take place on June 7-9, 2016, at the Javits Center in New York City, NY. MangoApps provides modern company intranets and team collaboration software, allowing workers to stay connected and productive from anywhere in the world and from any device. For more information, please visit https://www.mangoapps.com/.
In his session at 18th Cloud Expo, Andrew Cole, Director of Solutions Engineering at Peak 10, will discuss how the newest technology advances are reducing the cost and complexity of traditional business continuity and disaster recovery solutions. Attendees will: Learn why having a full disaster recovery strategy is more important now than ever before Explore the key drivers of a successful disaster recovery solution Achieve measurable operational and business value from a disaster recovery ...
SYS-CON Events announced today that Super Micro Computer, Inc., a global leader in Embedded and IoT solutions, will exhibit at SYS-CON's 18th International Cloud Expo®, which will take place on June 7-9, 2016, at the Javits Center in New York City, NY. Supermicro (NASDAQ: SMCI), the leading innovator in high-performance, high-efficiency server technology, is a premier provider of advanced server Building Block Solutions® for Data Center, Cloud Computing, Enterprise IT, Hadoop/Big Data, HPC and ...
How will your company move to the cloud while ensuring a solid security posture? Organizations from small to large are increasingly adopting cloud solutions to deliver essential business services at a much lower cost. According to cyber security experts, the frequency and severity of cyber-attacks are on the rise, causing alarm to businesses and customers across a variety of industries. To defend against exploits like these, a company must adopt a comprehensive security defense strategy that is ...
SYS-CON Events announced today that Hanu Software will exhibit at SYS-CON's 18th International Cloud Expo®, which will take place on June 7-9, 2016, at the Javits Center in New York City, NY. Leveraging best-in-class people, processes, and technologies, Hanu provides high-quality, high-value software development and business process outsourcing services to independent software vendors (ISVs) and enterprises.
What a difference a year makes. Organizations aren’t just talking about IoT possibilities, it is now baked into their core business strategy. With IoT, billions of devices generating data from different companies on different networks around the globe need to interact. From efficiency to better customer insights to completely new business models, IoT will turn traditional business models upside down. In the new customer-centric age, the key to success is delivering critical services and apps wit...
Join us at Cloud Expo | @ThingsExpo 2016 – June 7-9 at the Javits Center in New York City and November 1-3 at the Santa Clara Convention Center in Santa Clara, CA – and deliver your unique message in a way that is striking and unforgettable by taking advantage of SYS-CON's unmatched high-impact, result-driven event / media packages.
In his keynote at 18th Cloud Expo, Andrew Keys, Co-Founder of ConsenSys Enterprise, will provide an overview of the evolution of the Internet and the Database and the future of their combination – the Blockchain. Andrew Keys is Co-Founder of ConsenSys Enterprise. He comes to ConsenSys Enterprise with capital markets, technology and entrepreneurial experience. Previously, he worked for UBS investment bank in equities analysis. Later, he was responsible for the creation and distribution of life ...
The initial debate is over: Any enterprise with a serious commitment to IT is migrating to the cloud. But things are not so simple. There is a complex mix of on-premises, colocated, and public-cloud deployments. In this power panel at 18th Cloud Expo, moderated by Conference Chair Roger Strukhoff, panelists will look at the present state of cloud from the C-level view, and how great companies and rock star executives can use cloud computing to meet their most ambitious and disruptive business ...
SYS-CON Events announced today that MobiDev will exhibit at SYS-CON's 18th International Cloud Expo®, which will take place on June 7-9, 2016, at the Javits Center in New York City, NY. MobiDev is a software company that develops and delivers turn-key mobile apps, websites, web services, and complex software systems for startups and enterprises. Since 2009 it has grown from a small group of passionate engineers and business managers to a full-scale mobile software company with over 200 develope...
SYS-CON Events announced today that BMC Software has been named "Siver Sponsor" of SYS-CON's 18th Cloud Expo, which will take place on June 7-9, 2015 at the Javits Center in New York, New York. BMC is a global leader in innovative software solutions that help businesses transform into digital enterprises for the ultimate competitive advantage. BMC Digital Enterprise Management is a set of innovative IT solutions designed to make digital business fast, seamless, and optimized from mainframe to mo...
As cloud and storage projections continue to rise, the number of organizations moving to the cloud is escalating and it is clear cloud storage is here to stay. However, is it secure? Data is the lifeblood for government entities, countries, cloud service providers and enterprises alike and losing or exposing that data can have disastrous results. There are new concepts for data storage on the horizon that will deliver secure solutions for storing and moving sensitive data around the world. ...
SoftLayer operates a global cloud infrastructure platform built for Internet scale. With a global footprint of data centers and network points of presence, SoftLayer provides infrastructure as a service to leading-edge customers ranging from Web startups to global enterprises. SoftLayer's modular architecture, full-featured API, and sophisticated automation provide unparalleled performance and control. Its flexible unified platform seamlessly spans physical and virtual devices linked via a world...